Education

Courses

01-12-2015 Introduction to Git (co-organiser) LUMC Leiden
28-30-09-2015 Next generation sequencing (NGS) data analysis (co-organiser) UMCG Groningen
14,17-04-2015 Introduction to NGS data analysis Avans Hogeschool Breda
26-27-01-2015 Linux and basic scripting Hogeschool Leiden
01-03-09-2014 Next generation sequencing (NGS) data analysis LUMC Leiden
14-18-07-2014 Python programming (co-organiser) LUMC Leiden
23-06-2014 Introduction to Git LUMC Leiden
22-05-2014 Introduction to NGS data analysis LUMC Leiden
01-04-2014 Introduction to NGS data analysis Avans Hogeschool Breda
21-23-10-2013 Introduction Linux and command line scripting LUMC Leiden
14-10-2013 Introduction to Git LUMC Leiden
28-30-08-2013 Next generation sequencing (NGS) data analysis UMCU Utrecht
05-09-08-2013 Python programming (co-organiser) LUMC Leiden
05-04-2013 Introduction to NGS data analysis Avans Hogeschool Breda
11-13-09-2012 Next generation sequencing (NGS) data analysis EMC Rotterdam
30-03-2012 Introduction to NGS data analysis Avans Hogeschool Breda
05-07-04-2011 Next generation sequencing (NGS) data analysis LUMC Leiden
13-05-2011 Introduction to NGS data analysis Avans Hogeschool Breda
13-12-2010 Introduction to NGS data analysis Katholieke Universiteit Leuven
01-03-10-2010 Next generation sequencing (NGS) data analysis LUMC Leiden
29-10-2010 Introduction to Linux LUMC Leiden
26-03-2010 Introduction to Linux (co-organiser) LUMC Leiden

Next generation sequencing (NGS) data analysis

2015

2014

2013

2012

2011

2010

Introduction to NGS data analysis - Avans Hogeschool Breda

2015

See the course website for more information.

2014

Old style

Introduction Linux and command line scripting

2015

See the course website for more information.

2013

Introduction to git

2015

See the course website for more information.

2014

2013

Python programming

See the course website for more information. Also see this nice news item.

Introduction to NGS data analysis - Molecular Microbiology Leiden 2014

Introduction to NGS data analysis - Katholieke Universiteit Leuven

Introduction to Linux - LUMC Leiden

See the course website for more information.

Invited lectures

01-02-2016 Applications of k-mer profiling in genomics TU/e Eindhoven
15-10-2015 Variant Calling Hogeschool Leiden
21-08-2015 Prioritisation and variant effect prediction 3Gb-test symposium Leiden
22-05-2015 NGS data analysis overview Hogeschool Leiden
22-04-2015 NGS data flows 3Gb-test course Prague
22-04-2015 LOVD+ 3Gb-test course Prague
22-10-2014 Introduction to NGS data analysis LUMC Leiden
10-10-2014 Variant Calling Hogeschool Leiden
09-09-2014 NGS data flows 3Gb-test workshop Athens
09-09-2014 LOVD+ 3Gb-test workshop Athens
02-06-2014 Bioinformatics at the LGTC LUMC Leiden
22-05-2014 NGS data analysis overview Hogeschool Leiden
08-11-2013 Bioinformatics in molecular genetics Hogeschool Leiden
30-10-2013 RNA-seq using Galaxy Leiden University
08-10-2013 Variant Calling Hogeschool Leiden
30-06-2013 RNASeq using Galaxy (handouts) University of Oslo
28-05-2013 GAPSS3 using Galaxy Erasmus MC Rotterdam
07-02-2013 Functional annotation of metagenomes LUMC Leiden
07-01-2013 Clusters and parallelising workflows Hogeschool Leiden
11-12-2012 E. coli data analysis LUMC Leiden
03-12-2012 GAPSS3 using Galaxy Avans Hogeschool Breda
14-11-2012 Diagnostic variant database Erasmus MC Rotterdam
18-10-2012 ICT and research LUMC Leiden
15-10-2012 RNASeq using Galaxy AMC Amsterdam
10-10-2012 Variant Calling Hogeschool Leiden
11-06-2012 RNASeq using Galaxy LUMC Leiden
23-03-2012 Scheduling with Make (movie) NBIC Utrecht
10-04-2012 Metagenomics NBIC Utrecht
05-04-2012 GAPSS3 using Galaxy UMCN Nijmegen
15-07-2011 Bioinformatics best practices NBIC Utrecht
04-07-2011 QC and accounting KeyGene Wageningen
20-05-2011 Mutalyzer 2.0 NBIC Utrecht
18-03-2011 Exome sequencing data analysis NBIC Utrecht
10-03-2011 Diagnostic variant database NBIC Utrecht

Other lectures

2015

2014

2013

2012

2011

2010

2009

Classes

Fall 2008: Assistant for the Seminar DNA String Algorithms.

Fall 2005, 2006, 2007, 2008: In the autumn semester I gave the practical course Fundamental Informatics 1. This course was in Dutch.

  • Click here for answers and more information.

Spring 2007, 2008: In the spring semester Frank Takes and I gave the practical course Algorithmics. This course was in Dutch.

  • Solutions for the course in 2007.
  • Solutions for the course in 2008.

Spring 2006: The course Artificial Intelligence was short on assistants, so I took over part of the assignment reviewing. I also made one of the assignments.

Spring 1998: Teaching assistant for programming methods for the CMG course at LIACS.

1998: Teaching internet classes at the social cultural center CASCA in Heemstede.